expression microarray analysis Search Results


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Phalanx Biotech expression microarray analysis
JMJD3 and KIAA1718 share common targets. (A) Expression <t>microarray</t> analyses found that there was a significant overlap between genes down-regulated by JMJD3 shRNAs and KIAA1718 shRNAs. The P-value was calculated by a hypergeometric probability test. The list of genes can be found in Supplemental Table S2. (B) A subset of genes from the common expression microarray list was verified with qRT–PCR. Shown are the relative fold changes of mean ± SEM from three independent experiments. (C) Statistically significant overlap between JMJD3- and KIAA1718-bound genes in TPA-treated HL-60 cells. (D) The scatter plot shows the correlation between JMJD3 and KIAA1718 peak intensities relative to the input. (E) ChIP-seq analysis at the ZC3H12c and CD44 loci.
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Image Search Results


JMJD3 and KIAA1718 share common targets. (A) Expression microarray analyses found that there was a significant overlap between genes down-regulated by JMJD3 shRNAs and KIAA1718 shRNAs. The P-value was calculated by a hypergeometric probability test. The list of genes can be found in Supplemental Table S2. (B) A subset of genes from the common expression microarray list was verified with qRT–PCR. Shown are the relative fold changes of mean ± SEM from three independent experiments. (C) Statistically significant overlap between JMJD3- and KIAA1718-bound genes in TPA-treated HL-60 cells. (D) The scatter plot shows the correlation between JMJD3 and KIAA1718 peak intensities relative to the input. (E) ChIP-seq analysis at the ZC3H12c and CD44 loci.

Journal: Genes & Development

Article Title: The histone H3 Lys 27 demethylase JMJD3 regulates gene expression by impacting transcriptional elongation

doi: 10.1101/gad.186056.111

Figure Lengend Snippet: JMJD3 and KIAA1718 share common targets. (A) Expression microarray analyses found that there was a significant overlap between genes down-regulated by JMJD3 shRNAs and KIAA1718 shRNAs. The P-value was calculated by a hypergeometric probability test. The list of genes can be found in Supplemental Table S2. (B) A subset of genes from the common expression microarray list was verified with qRT–PCR. Shown are the relative fold changes of mean ± SEM from three independent experiments. (C) Statistically significant overlap between JMJD3- and KIAA1718-bound genes in TPA-treated HL-60 cells. (D) The scatter plot shows the correlation between JMJD3 and KIAA1718 peak intensities relative to the input. (E) ChIP-seq analysis at the ZC3H12c and CD44 loci.

Article Snippet: RNA extracted from two biologically independent groups of stable cells subjected to different treatment was sent to the Phalanx Biotech Group for expression microarray analysis.

Techniques: Expressing, Microarray, Quantitative RT-PCR, ChIP-sequencing